STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ34416.1Formate dehydrogenase subunit alpha; COG3383 Uncharacterized anaerobic dehydrogenase. (959 aa)    
Predicted Functional Partners:
AGZ34414.1
Formate dehydrogenase subunit gamma; COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit.
 
 0.999
AGZ34415.1
NADH dehydrogenase (quinone); COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit.
 
 0.999
AGZ34417.1
Formate dehydrogenase subunit delta.
 
 0.999
AGZ37326.1
COG2864 Cytochrome b subunit of formate dehydrogenase.
  
 
 0.995
AGZ37327.1
Nitrate-inducible formate dehydrogenase subunit beta; COG0437 Fe-S-cluster-containing hydrogenase components 1.
  
 
 0.988
AGZ35906.1
COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit.
  
 0.969
AGZ37329.1
Molybdopterin oxidoreductase Fe4S4 region; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing.
 
 
0.960
AGZ37328.1
Formate dehydrogenase subunit alpha; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing.
  
 
0.958
AGZ35907.1
COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit.
 
 0.933
AGZ35908.1
NADH dehydrogenase I subunit F; COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit.
 
 0.933
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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