STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ34417.1Formate dehydrogenase subunit delta. (67 aa)    
Predicted Functional Partners:
AGZ34416.1
Formate dehydrogenase subunit alpha; COG3383 Uncharacterized anaerobic dehydrogenase.
 
 0.999
AGZ34414.1
Formate dehydrogenase subunit gamma; COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit.
 
 
 0.997
AGZ34415.1
NADH dehydrogenase (quinone); COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit.
 
 
 0.997
AGZ37326.1
COG2864 Cytochrome b subunit of formate dehydrogenase.
     
 0.942
AGZ37328.1
Formate dehydrogenase subunit alpha; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing.
     
 0.941
AGZ37329.1
Molybdopterin oxidoreductase Fe4S4 region; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing.
     
 0.938
AGZ37327.1
Nitrate-inducible formate dehydrogenase subunit beta; COG0437 Fe-S-cluster-containing hydrogenase components 1.
     
  0.930
AGZ37506.1
Glutathione-independent formaldehyde dehydrogena; COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
    
 0.912
AGZ36653.1
S-formylglutathione hydrolase; COG0627 Predicted esterase.
    
  0.907
AGZ33216.1
COG3741 N-formylglutamate amidohydrolase.
     
  0.900
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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