STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGZ34418.1COG4178 ABC-type uncharacterized transport system, permease and ATPase components. (603 aa)    
Predicted Functional Partners:
AGZ34415.1
NADH dehydrogenase (quinone); COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit.
   
   0.492
AGZ34218.1
ABC transporter ATP-binding protein; COG1131 ABC-type multidrug transport system, ATPase component.
     
 0.491
AGZ36007.1
COG1131 ABC-type multidrug transport system, ATPase component.
     
 0.491
AGZ35065.1
COG2186 Transcriptional regulators.
       0.487
recA
COG0468 RecA/RadA recombinase.
   
   0.487
AGZ36878.1
Two component Fis family transcriptional regulator; COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain.
       0.487
AGZ36879.1
COG0642 Signal transduction histidine kinase.
       0.487
AGZ34414.1
Formate dehydrogenase subunit gamma; COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit.
       0.465
AGZ34416.1
Formate dehydrogenase subunit alpha; COG3383 Uncharacterized anaerobic dehydrogenase.
       0.465
AGZ34417.1
Formate dehydrogenase subunit delta.
       0.465
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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