STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGZ34419.1Hypothetical protein. (209 aa)    
Predicted Functional Partners:
AGZ35414.1
Putative lipoprotein.
  
     0.700
AGZ34420.1
COG0477 Permeases of the major facilitator superfamily.
       0.524
AGZ37605.1
Prophage PSPPH06, site-specific recombinase phage integrase; COG0582 Integrase.
  
    0.511
AGZ33395.1
AsmA family protein; COG2982 Uncharacterized protein involved in outer membrane biogenesis.
  
     0.461
dsbG
Disulfide isomerase/thiol-disulfide oxidase; COG1651 Protein-disulfide isomerase.
  
     0.457
AGZ32976.1
Sodium-dependent inorganic phosphate transporter; COG1283 Na+/phosphate symporter.
  
     0.445
AGZ35720.1
COG0582 Integrase.
  
    0.444
AGZ33632.1
Fusaric acid resistance protein region; COG1289 Predicted membrane protein.
  
     0.423
AGZ34583.1
Integrase family protein; COG0582 Integrase.
  
    0.403
AGZ34648.1
Integrase family protein; COG0582 Integrase.
  
    0.402
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.