Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
greBCOG0782 Transcription elongation factor. (158 aa)    
Predicted Functional Partners:
AGZ37371.1
COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit.
  
 
 0.921
rpoB
COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit.
  
 
 0.888
AGZ37340.1
COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit.
 
 
 0.819
rpoZ
COG1758 DNA-directed RNA polymerase, subunit K/omega.
 
 
 
 0.780
AGZ34538.1
TraR/DksA family transcriptional regulator; COG1734 DnaK suppressor protein.
  
 
 
 0.732
AGZ33532.1
RNA polymerase-binding protein DksA; COG1734 DnaK suppressor protein.
  
 
 
 0.729
nusG
Transcription antitermination protein NusG; COG0250 Transcription antiterminator.
 
  
 0.651
AGZ33035.1
Nucleoside diphosphate kinase regulator; COG0782 Transcription elongation factor.
      
 0.615
AGZ34461.1
Arylesterase; COG2755 Lysophospholipase L1 and related esterases.
 
     0.588
AGZ34457.1
Hypothetical protein.
       0.572
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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