STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ34465.1Hypothetical protein; COG2388 Predicted acetyltransferase. (93 aa)    
Predicted Functional Partners:
AGZ33802.1
NmrA family protein; COG2910 Putative NADH-flavin reductase.
  
    0.728
AGZ36420.1
CsbD family protein; COG3237 Uncharacterized protein conserved in bacteria.
  
    0.603
AGZ37052.1
NAD-dependent epimerase/dehydratase; COG1090 Predicted nucleoside-diphosphate sugar epimerase.
  
    0.572
AGZ33072.1
COG0120 Ribose 5-phosphate isomerase.
  
    0.559
AGZ35502.1
Sulfatase domain-containing protein; COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily.
  
     0.423
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.