Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGZ34536.1COG1960 Acyl-CoA dehydrogenases. (375 aa)    
Predicted Functional Partners:
AGZ34537.1
COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
 0.991
AGZ34535.1
COG0183 Acetyl-CoA acetyltransferase.
  
 0.987
fadB
Multifunctional fatty acid oxidation complex subunit alpha; COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
 0.981
AGZ34533.1
COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
  
 
 0.971
AGZ35307.1
COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
 0.971
fadA
3-ketoacyl-CoA thiolase; COG0183 Acetyl-CoA acetyltransferase.
  
 0.951
AGZ35321.1
COG0183 Acetyl-CoA acetyltransferase.
  
 0.951
AGZ33597.1
COG0183 Acetyl-CoA acetyltransferase.
  
 0.949
AGZ35821.1
Beta-ketothiolase; COG0183 Acetyl-CoA acetyltransferase.
  
 0.949
AGZ37202.1
COG0183 Acetyl-CoA acetyltransferase.
  
 0.948
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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