STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ34572.1Hypothetical protein. (105 aa)    
Predicted Functional Partners:
AGZ37213.1
Hypothetical protein.
  
     0.561
AGZ33052.1
Hypothetical protein; COG0668 Small-conductance mechanosensitive channel.
  
     0.518
AGZ34280.1
Hypothetical protein.
  
     0.513
AGZ37207.1
Lipoprotein.
  
     0.502
AGZ32980.1
Hypothetical protein.
  
     0.495
AGZ37160.1
Hypothetical protein.
  
     0.484
AGZ33682.1
COG0180 Tryptophanyl-tRNA synthetase.
  
     0.433
AGZ33662.1
COG0726 Predicted xylanase/chitin deacetylase.
  
     0.424
AGZ37897.1
COG3436 Transposase and inactivated derivatives.
  
     0.423
AGZ37284.1
Hypothetical protein.
  
     0.417
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.