Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGZ34649.1Hypothetical protein. (58 aa)    
Predicted Functional Partners:
AGZ34650.1
COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases.
       0.746
AGZ34651.1
Hypothetical protein.
       0.677
AGZ34652.1
Hypothetical protein.
       0.533
AGZ34653.1
Hypothetical protein.
       0.442
AGZ34654.1
Hypothetical protein.
       0.442
AGZ34648.1
Integrase family protein; COG0582 Integrase.
       0.408
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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