STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ34687.1Hypothetical protein. (123 aa)    
Predicted Functional Partners:
AGZ34684.1
COG3645 Uncharacterized phage-encoded protein.
       0.773
AGZ34685.1
Hypothetical protein.
       0.773
AGZ34686.1
IstB ATP binding domain-containing protein; COG1484 DNA replication protein.
       0.773
AGZ34688.1
Hypothetical protein.
       0.773
AGZ34683.1
Hypothetical protein.
       0.455
AGZ34922.1
Hypothetical protein.
  
     0.434
AGZ34689.1
Hypothetical protein.
       0.430
AGZ34690.1
Hypothetical protein.
       0.430
AGZ34691.1
NinB family protein.
       0.430
AGZ34692.1
Bacteriophage lambda NinG family protein.
       0.430
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.