Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGZ34716.1COG4672 Phage-related protein. (249 aa)    
Predicted Functional Partners:
AGZ34715.1
Phage minor tail; COG4718 Phage-related protein.
 
   0.988
AGZ34714.1
COG5281 Phage-related minor tail protein.
 
 
 0.983
AGZ34717.1
NLP/P60 protein; COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily.
 
  
 0.975
AGZ34635.1
Phage minor tail family protein; COG4718 Phage-related protein.
 
   0.925
AGZ34639.1
COG4733 Phage-related protein, tail component.
 
   0.921
AGZ34725.1
COG4733 Phage-related protein, tail component.
 
   0.921
AGZ36518.1
COG4733 Phage-related protein, tail component.
 
   0.921
AGZ36523.1
Prophage LambdaSo, minor tail protein M; COG4718 Phage-related protein.
 
   0.921
AGZ34638.1
COG4723 Phage-related protein, tail component.
 
   0.920
AGZ34724.1
Bacteriophage lambda tail assembly I; COG4723 Phage-related protein, tail component.
 
   0.920
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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