Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGZ34935.1COG0477 Permeases of the major facilitator superfamily. (401 aa)    
Predicted Functional Partners:
AGZ36072.1
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
    
 0.803
AGZ36073.1
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
    
 0.803
AGZ36074.1
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
    
 0.803
AGZ36083.1
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
    
 0.795
AGZ34936.1
M20/M25/M40 family peptidase; COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase.
       0.782
AGZ34040.1
COG0477 Permeases of the major facilitator superfamily.
 
     0.522
AGZ34937.1
COG0039 Malate/lactate dehydrogenases.
     
 0.508
AGZ33978.1
COG2977 Phosphopantetheinyl transferase component of siderophore synthetase.
     
  0.495
AGZ33168.1
COG0236 Acyl carrier protein.
     
  0.430
AGZ33169.1
COG0236 Acyl carrier protein.
     
  0.430
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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