STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ35170.1COG0477 Permeases of the major facilitator superfamily. (449 aa)    
Predicted Functional Partners:
AGZ35167.1
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
     0.620
AGZ35168.1
COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
       0.573
AGZ35169.1
NIPSNAP family protein.
       0.568
AGZ35400.1
COG0477 Permeases of the major facilitator superfamily.
  
    0.523
AGZ35166.1
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
 
     0.485
benB
COG5517 Small subunit of phenylpropionate dioxygenase.
 
  
 0.471
AGZ35238.1
Catechol 1,2-dioxygenase; COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
 
   
 0.454
AGZ35237.1
COG4829 Muconolactone delta-isomerase.
 
   
 0.451
benA
Benzoate dioxygenase subunit alpha; COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit.
 
     0.442
benD
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
   
 0.402
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.