Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGZ35329.1COG2149 Predicted membrane protein. (128 aa)    
Predicted Functional Partners:
AGZ35328.1
Hypothetical protein.
       0.773
AGZ35330.1
Hypothetical protein.
       0.761
AGZ35331.1
COG0583 Transcriptional regulator.
       0.510
AGZ34050.1
Nitrite reductase, (NAD(P)H) small subunit; COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases.
 
     0.400
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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