STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ35470.1COG0169 Shikimate 5-dehydrogenase. (272 aa)    
Predicted Functional Partners:
AGZ35469.1
COG0757 3-dehydroquinate dehydratase II.
 
 
 0.983
aroK
COG0703 Shikimate kinase.
 
 
 0.957
AGZ35835.1
COG0169 Shikimate 5-dehydrogenase.
  
  
  0.947
AGZ37223.1
COG0757 3-dehydroquinate dehydratase II.
 
 
 0.929
AGZ35708.1
COG0757 3-dehydroquinate dehydratase II.
 
 
 0.928
AGZ35396.1
COG0169 Shikimate 5-dehydrogenase.
  
  
 
0.927
AGZ35709.1
COG0169 Shikimate 5-dehydrogenase.
  
  
 
0.924
aroE
COG0169 Shikimate 5-dehydrogenase.
  
  
 
0.908
AGZ35543.1
Pyrrolo-quinoline quinone; COG4993 Glucose dehydrogenase.
     
  0.900
AGZ37442.1
COG4993 Glucose dehydrogenase.
     
  0.900
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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