STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ35611.1COG3248 Nucleoside-binding outer membrane protein. (268 aa)    
Predicted Functional Partners:
AGZ36086.1
Extracellular solute-binding protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.653
AGZ34934.1
Hypothetical protein.
   
 
 0.613
AGZ33983.1
Outer membrane protein H1.
     
 0.607
AGZ36735.1
Hypothetical protein.
  
     0.582
AGZ37416.1
LPS-assembly protein lptD; COG1452 Organic solvent tolerance protein OstA.
     
 0.549
AGZ33458.1
Hypothetical protein.
  
     0.541
AGZ35320.1
Hypothetical protein.
  
 
 0.478
AGZ33411.1
TonB-dependent copper receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
  
  0.475
AGZ37032.1
Hypothetical protein.
  
 
 0.471
AGZ34746.1
Hypothetical protein.
  
 
 0.468
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.