STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ35822.1COG1250 3-hydroxyacyl-CoA dehydrogenase. (282 aa)    
Predicted Functional Partners:
AGZ34537.1
COG1024 Enoyl-CoA hydratase/carnithine racemase.
 0.998
AGZ35307.1
COG1024 Enoyl-CoA hydratase/carnithine racemase.
 0.998
AGZ35821.1
Beta-ketothiolase; COG0183 Acetyl-CoA acetyltransferase.
 0.995
AGZ34806.1
COG1024 Enoyl-CoA hydratase/carnithine racemase.
 0.991
AGZ33597.1
COG0183 Acetyl-CoA acetyltransferase.
 0.983
AGZ35321.1
COG0183 Acetyl-CoA acetyltransferase.
 0.981
AGZ34535.1
COG0183 Acetyl-CoA acetyltransferase.
 0.980
AGZ37202.1
COG0183 Acetyl-CoA acetyltransferase.
 
 0.970
AGZ34176.1
COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
 0.958
fadB
Multifunctional fatty acid oxidation complex subunit alpha; COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
0.953
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.