STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ35984.117 kDa surface antigen. (127 aa)    
Predicted Functional Partners:
AGZ35983.1
Hypothetical protein.
       0.640
AGZ33983.1
Outer membrane protein H1.
   
 0.516
AGZ34934.1
Hypothetical protein.
   
 0.487
AGZ35985.1
Citrate transporter; COG0471 Di- and tricarboxylate transporters.
       0.485
AGZ35195.1
COG1596 Periplasmic protein involved in polysaccharide export.
   
 0.477
motB
COG1360 Flagellar motor protein.
   
 0.459
AGZ36196.1
COG1360 Flagellar motor protein.
   
 0.459
AGZ34781.1
Putative outer membrane protein; COG3455 Uncharacterized protein conserved in bacteria.
   
 
 0.425
flgE
COG1749 Flagellar hook protein FlgE.
   
 
 0.424
AGZ36669.1
COG2825 Outer membrane protein.
  
 
 0.412
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.