STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ36108.1COG2812 DNA polymerase III, gamma/tau subunits. (670 aa)    
Predicted Functional Partners:
AGZ32812.1
COG0592 DNA polymerase sliding clamp subunit (PCNA homolog).
 
 
 0.998
AGZ34243.1
DNA polymerase III subunit delta; COG0470 ATPase involved in DNA replication.
 
 
0.998
holA
COG1466 DNA polymerase III, delta subunit.
 
 
 0.997
AGZ34524.1
COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
  
 0.993
AGZ36827.1
COG2927 DNA polymerase III, chi subunit.
  
 
 0.990
dnaE
COG0587 DNA polymerase III, alpha subunit.
 
 0.989
AGZ37474.1
COG2176 DNA polymerase III, alpha subunit (gram-positive type).
  
 0.942
dnaE2
COG0587 DNA polymerase III, alpha subunit.
  
 0.872
AGZ36107.1
COG0718 Uncharacterized protein conserved in bacteria.
  
  
 0.871
recR
COG0353 Recombinational DNA repair protein (RecF pathway).
 
  
 0.840
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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