STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ36112.1Hypothetical protein; COG0616 Periplasmic serine proteases (ClpP class). (213 aa)    
Predicted Functional Partners:
clpX
COG1219 ATP-dependent protease Clp, ATPase subunit.
  
 0.916
AGZ34775.1
ClpA/B-type protease; COG0542 ATPases with chaperone activity, ATP-binding subunit.
  
 0.739
AGZ35775.1
ATP-dependent Clp protease ATP-binding subunit ClpA; COG0542 ATPases with chaperone activity, ATP-binding subunit.
  
 0.739
AGZ37156.1
ATP-dependent Clp protease, ATP-binding subunit ClpB; COG0542 ATPases with chaperone activity, ATP-binding subunit.
  
 0.739
AGZ37892.1
ATPase; COG0542 ATPases with chaperone activity, ATP-binding subunit.
  
 0.739
AGZ33245.1
COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit.
  
 0.631
AGZ35906.1
COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit.
   
 
 0.628
atpC
COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit).
   
 
 0.589
AGZ33495.1
COG0576 Molecular chaperone GrpE (heat shock protein).
   
 
 0.518
AGZ37909.1
COG0224 F0F1-type ATP synthase, gamma subunit.
   
 0.501
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.