Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGZ36728.1Binding-protein-dependent transport system inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I. (310 aa)    
Predicted Functional Partners:
AGZ36729.1
ABC transporter permease; COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
 0.983
AGZ36727.1
COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
 
 0.978
AGZ34905.1
ABC transporter permease; COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
 0.930
AGZ36726.1
Extracellular solute-binding protein; COG0687 Spermidine/putrescine-binding periplasmic protein.
 
 
 0.928
AGZ34907.1
COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
 
 0.911
AGZ34821.1
Binding-protein-dependent transport system inner membrane protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
 0.898
AGZ34908.1
Extracellular solute-binding protein; COG0687 Spermidine/putrescine-binding periplasmic protein.
 
 
 0.866
AGZ37694.1
COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
 0.864
AGZ36730.1
COG1012 NAD-dependent aldehyde dehydrogenases.
 
     0.806
AGZ34820.1
ABC transporter-like protein; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
 
 0.781
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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