STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGZ36729.1ABC transporter permease; COG1177 ABC-type spermidine/putrescine transport system, permease component II. (268 aa)    
Predicted Functional Partners:
AGZ36728.1
Binding-protein-dependent transport system inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 0.983
AGZ36727.1
COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
 
 0.982
AGZ36726.1
Extracellular solute-binding protein; COG0687 Spermidine/putrescine-binding periplasmic protein.
 
 0.955
AGZ34822.1
Binding-protein-dependent transport system inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 0.954
AGZ34906.1
Protein PotB; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 0.930
AGZ34907.1
COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
 
 0.928
AGZ37695.1
Binding-protein-dependent transport system inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 0.928
AGZ34908.1
Extracellular solute-binding protein; COG0687 Spermidine/putrescine-binding periplasmic protein.
 
 0.915
AGZ37407.1
Binding-protein-dependent transport system inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 0.899
AGZ37839.1
Extracellular solute-binding protein; COG0687 Spermidine/putrescine-binding periplasmic protein.
 0.872
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.