STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ36733.1YaeQ family protein; COG4681 Uncharacterized protein conserved in bacteria. (180 aa)    
Predicted Functional Partners:
AGZ33334.1
COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit.
   
    0.934
minE
COG0851 Septum formation topological specificity factor.
   
    0.915
AGZ36732.1
single-stranded-DNA-specific exonuclease RecJ; COG0608 Single-stranded DNA-specific exonuclease.
  
  
 0.860
AGZ34338.1
COG3130 Ribosome modulation factor.
   
    0.783
AGZ37822.1
COG0704 Phosphate uptake regulator.
   
    0.771
AGZ36715.1
TetR family transcriptional regulator; COG3226 Uncharacterized protein conserved in bacteria.
   
    0.716
lolB
COG3017 Outer membrane lipoprotein involved in outer membrane biogenesis.
   
    0.704
AGZ33843.1
COG0681 Signal peptidase I.
   
    0.684
AGZ37493.1
COG0625 Glutathione S-transferase.
     
 0.620
AGZ36340.1
Transglutaminase-like domain-containing protein; COG1305 Transglutaminase-like enzymes, putative cysteine proteases.
      
 0.613
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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