STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ36782.1COG0590 Cytosine/adenosine deaminases. (159 aa)    
Predicted Functional Partners:
AGZ37383.1
Bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; COG1654 Biotin operon repressor.
  
    0.826
AGZ36783.1
COG2132 Putative multicopper oxidases.
  
    0.792
AGZ35248.1
COG1929 Glycerate kinase.
 
 
    0.686
guaA
COG0518 GMP synthase - Glutamine amidotransferase domain.
 
  
 0.652
AGZ33442.1
PhoH family protein; COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase.
  
     0.639
truA
COG0101 Pseudouridylate synthase.
 
  
 0.626
AGZ36661.1
tRNA(Ile)-lysidine synthetase; COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control.
  
 0.617
glmM
COG1109 Phosphomannomutase.
  
   
 0.569
AGZ37294.1
Polyprenyl synthetase; COG0142 Geranylgeranyl pyrophosphate synthase.
  
  
 0.554
AGZ36705.1
Peptidase M22 glycoprotease; COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone.
 
  
 0.531
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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