STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGZ36816.1Hypothetical protein; COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit. (122 aa)    
Predicted Functional Partners:
AGZ36817.1
Sigma-54 dependent transcriptional regulator/sensory box protein; COG3283 Transcriptional regulator of aromatic amino acids metabolism.
       0.698
AGZ36815.1
COG0549 Carbamate kinase.
  
    0.631
AGZ33941.1
Leucine ABC transporter subunit substrate-binding protein LivK; COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
       0.487
AGZ33943.1
Hypothetical protein; COG5626 Uncharacterized conserved small protein.
       0.487
AGZ36813.1
COG2235 Arginine deiminase.
  
    0.433
AGZ36814.1
COG0078 Ornithine carbamoyltransferase.
       0.429
AGZ36819.1
COG0403 Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain.
       0.417
AGZ36818.1
COG0509 Glycine cleavage system H protein (lipoate-binding).
       0.416
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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