STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ36924.1Iron-sulfur cluster assembly protein IscA. (107 aa)    
Predicted Functional Partners:
hscB
Co-chaperone HscB; COG1076 DnaJ-domain-containing proteins 1.
 
 
 0.993
AGZ36925.1
Scaffold protein; COG0822 NifU homolog involved in Fe-S cluster formation.
 
  
 0.982
AGZ36926.1
COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
 
  
 0.943
hscA
Chaperone protein HscA; COG0443 Molecular chaperone.
 
 0.935
AGZ36920.1
Ferredoxin, 2Fe-2S type, ISC system; COG0633 Ferredoxin.
 
 
 0.921
AGZ36927.1
COG1959 Predicted transcriptional regulator.
  
  
 0.856
AGZ34809.1
Class V aminotransferase; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
 
  
 0.827
AGZ36919.1
COG2975 Uncharacterized protein conserved in bacteria.
 
  
 0.748
dnaK
COG0443 Molecular chaperone.
  
 0.680
AGZ33887.1
COG0278 Glutaredoxin-related protein.
 
 0.595
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.