STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemACOG0373 Glutamyl-tRNA reductase. (425 aa)    
Predicted Functional Partners:
AGZ33445.1
COG0001 Glutamate-1-semialdehyde aminotransferase.
 
 0.990
hemC
COG0181 Porphobilinogen deaminase.
  
 0.982
gltX
glutamyl-tRNA ligase; COG0008 Glutamyl- and glutaminyl-tRNA synthetases.
     
 0.935
AGZ34955.1
COG0113 Delta-aminolevulinic acid dehydratase.
 
  
 0.884
prfA
COG0216 Protein chain release factor A.
  
  
 0.875
AGZ35766.1
COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain).
 
  
 0.824
AGZ37061.1
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; COG2890 Methylase of polypeptide chain release factors.
     
 0.824
AGZ37060.1
Molybdopterin biosynthesis protein MoeB; COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.
     
 0.818
AGZ37059.1
COG0796 Glutamate racemase.
       0.803
AGZ34332.1
uroporphyrin-III C-methyltransferase; COG0007 Uroporphyrinogen-III methylase.
 
  
 0.749
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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