Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGZ37115.1Hypothetical protein. (617 aa)    
Predicted Functional Partners:
AGZ37114.1
Hypothetical protein.
 
     0.944
AGZ36712.1
Lipoprotein; COG1073 Hydrolases of the alpha/beta superfamily.
 
     0.656
AGZ37117.1
COG0782 Transcription elongation factor.
 
     0.618
AGZ37116.1
Lipoprotein.
       0.573
AGZ35976.1
Phosphoglycerate mutase; COG0406 Fructose-2,6-bisphosphatase.
  
     0.505
AGZ33337.1
HAMP domain-containing protein.
  
     0.464
AGZ37113.1
COG1067 Predicted ATP-dependent protease.
       0.461
AGZ36708.1
Hypothetical protein.
  
     0.440
AGZ34033.1
Hypothetical protein.
  
     0.425
AGZ33262.1
COG1231 Monoamine oxidase.
  
     0.405
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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