STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lspACOG0597 Lipoprotein signal peptidase. (171 aa)    
Predicted Functional Partners:
ileS
COG0060 Isoleucyl-tRNA synthetase.
  
 0.916
AGZ37176.1
COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2.
  
  
 0.887
AGZ37179.1
Bifunctional riboflavin kinase/FMN adenylyltransferase; COG0196 FAD synthase.
 
  
 0.874
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; COG0761 Penicillin tolerance protein.
  
  
 0.861
AGZ37180.1
COG0728 Uncharacterized membrane protein, putative virulence factor.
   
 0.739
AGZ33080.1
COG0682 Prolipoprotein diacylglyceryltransferase.
 
   
 0.629
glmM
COG1109 Phosphomannomutase.
 
 
 
 0.625
tig
Trigger factor; COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor).
 
  
 0.581
AGZ36063.1
Macrolide transporter ATP-binding /permease protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
  
 0.556
AGZ36081.1
Redoxin domain-containing protein; COG0682 Prolipoprotein diacylglyceryltransferase.
     
 0.539
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.