STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ileSCOG0060 Isoleucyl-tRNA synthetase. (943 aa)    
Predicted Functional Partners:
AGZ36623.1
COG0442 Prolyl-tRNA synthetase.
  
 0.987
argS
COG0018 Arginyl-tRNA synthetase.
  
 0.978
leuS
COG0495 Leucyl-tRNA synthetase.
 
0.978
metG
COG0143 Methionyl-tRNA synthetase.
  
 0.978
lspA
COG0597 Lipoprotein signal peptidase.
 
  
 0.945
lysS
COG1190 Lysyl-tRNA synthetase (class II).
 
 0.938
AGZ34878.1
COG0008 Glutamyl- and glutaminyl-tRNA synthetases.
  
 0.933
gltX
glutamyl-tRNA ligase; COG0008 Glutamyl- and glutaminyl-tRNA synthetases.
  
 0.931
pheT
phenylalanyl-tRNA ligase subunit beta; COG0073 EMAP domain.
  
 
 0.929
AGZ37176.1
COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2.
  
  
 0.909
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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