STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ37180.1COG0728 Uncharacterized membrane protein, putative virulence factor. (512 aa)    
Predicted Functional Partners:
AGZ37179.1
Bifunctional riboflavin kinase/FMN adenylyltransferase; COG0196 FAD synthase.
    
 0.906
lspA
COG0597 Lipoprotein signal peptidase.
   
 0.739
AGZ37239.1
Rod shape-determining protein RodA; COG0772 Bacterial cell division membrane protein.
 
  
 0.637
AGZ33703.1
Peptidoglycan glycosyltransferase; COG0768 Cell division protein FtsI/penicillin-binding protein 2.
 
   
 0.631
rpsT
COG0268 Ribosomal protein S20.
 
   
 0.617
AGZ33708.1
COG0772 Bacterial cell division membrane protein.
 
  
 0.587
AGZ37176.1
COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2.
       0.572
ileS
COG0060 Isoleucyl-tRNA synthetase.
      0.572
AGZ34776.1
COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains.
   
 
 0.568
AGZ35211.1
COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
     
 0.568
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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