STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsTCOG0268 Ribosomal protein S20. (92 aa)    
Predicted Functional Partners:
rpsO
COG0184 Ribosomal protein S15P/S13E.
  
 0.990
rpsI
COG0103 Ribosomal protein S9.
 
 0.990
rpsP
COG0228 Ribosomal protein S16.
  
 0.989
rpsU
COG0828 Ribosomal protein S21.
  
 0.989
rpmE
COG0254 Ribosomal protein L31.
 
 
 0.986
rpsR
COG0238 Ribosomal protein S18.
 
 0.986
rplM
COG0102 Ribosomal protein L13.
  
 
 0.985
rpsJ
COG0051 Ribosomal protein S10.
   
 0.985
rpmB
COG0227 Ribosomal protein L28.
  
 
 0.985
rpmF
COG0333 Ribosomal protein L32.
   
 
 0.984
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.