Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGZ37309.1Type 12 methyltransferase; COG3897 Predicted methyltransferase. (219 aa)    
Predicted Functional Partners:
AGZ37308.1
COG3126 Uncharacterized protein conserved in bacteria.
  
    0.896
AGZ37310.1
COG3118 Thioredoxin domain-containing protein.
       0.822
AGZ37306.1
Riboflavin biosynthesis protein RibD; COG0117 Pyrimidine deaminase.
       0.755
nrdR
COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains.
       0.755
AGZ37305.1
COG0307 Riboflavin synthase alpha chain.
       0.554
AGZ37304.1
Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase.
       0.549
AGZ33279.1
COG0640 Predicted transcriptional regulators.
  
     0.520
AGZ37671.1
FAD linked oxidase domain-containing protein; COG0277 FAD/FMN-containing dehydrogenases.
  
     0.437
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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