STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplBCOG0090 Ribosomal protein L2. (274 aa)    
Predicted Functional Partners:
rplE
COG0094 Ribosomal protein L5.
 
 0.999
rplN
COG0093 Ribosomal protein L14.
 
 0.999
rplP
COG0197 Ribosomal protein L16/L10E.
 0.999
rpsC
COG0092 Ribosomal protein S3.
 
 0.999
rplV
COG0091 Ribosomal protein L22.
 
 0.999
rpsS
COG0185 Ribosomal protein S19.
 
 0.999
rplC
COG0087 Ribosomal protein L3.
 
 0.999
rpsL
COG0048 Ribosomal protein S12.
 
 0.999
rpsN
COG0199 Ribosomal protein S14.
 
 0.998
rpsQ
COG0186 Ribosomal protein S17.
 
 0.998
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.