STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ37413.1COG1076 DnaJ-domain-containing proteins 1. (254 aa)    
Predicted Functional Partners:
AGZ36925.1
Scaffold protein; COG0822 NifU homolog involved in Fe-S cluster formation.
  
 
 0.912
AGZ35743.1
Fe/S biogenesis protein nfuA.
  
 
 0.863
AGZ37414.1
Nucleotidyl transferase; COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon).
  
    0.810
AGZ37415.1
COG3178 Predicted phosphotransferase related to Ser/Thr protein kinases.
       0.803
dnaK
COG0443 Molecular chaperone.
  
 0.776
hscA
Chaperone protein HscA; COG0443 Molecular chaperone.
  
 0.776
AGZ33401.1
Molecular chaperone-like protein; COG0443 Molecular chaperone.
  
 0.750
AGZ37417.1
SurA domain-containing protein; COG0760 Parvulin-like peptidyl-prolyl isomerase.
 
   
 0.679
AGZ37416.1
LPS-assembly protein lptD; COG1452 Organic solvent tolerance protein OstA.
     
 0.651
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase; COG1995 Pyridoxal phosphate biosynthesis protein.
       0.595
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.