STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nudEAdenosine nucleotide hydrolase NudE; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. (188 aa)    
Predicted Functional Partners:
nudF
ADP-ribose pyrophosphatase NudF; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
 
 
 0.931
AGZ35652.1
Ribose-phosphate pyrophosphokinase; COG0462 Phosphoribosylpyrophosphate synthetase.
    
 0.906
AGZ37067.1
Ribose-phosphate pyrophosphokinase; COG0462 Phosphoribosylpyrophosphate synthetase.
    
 0.906
AGZ37788.1
Bifunctional phosphomannomutase/phosphoglucomutase; COG1109 Phosphomannomutase.
    
  0.902
AGZ35560.1
COG0033 Phosphoglucomutase.
     
  0.900
AGZ37631.1
3'(2'),5'-bisphosphate nucleotidase; COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase.
  
    0.837
AGZ37633.1
COG1011 Predicted hydrolase (HAD superfamily).
 
    0.674
AGZ32952.1
DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI).
     
 0.418
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.