Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AGZ32812.1 | AGZ32952.1 | PVLB_00010 | PVLB_00710 | COG0592 DNA polymerase sliding clamp subunit (PCNA homolog). | DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | 0.995 |
AGZ32812.1 | AGZ33975.1 | PVLB_00010 | PVLB_05840 | COG0592 DNA polymerase sliding clamp subunit (PCNA homolog). | COG0209 Ribonucleotide reductase, alpha subunit. | 0.868 |
AGZ32812.1 | dut | PVLB_00010 | PVLB_25040 | COG0592 DNA polymerase sliding clamp subunit (PCNA homolog). | Deoxyuridine 5'-triphosphate nucleotidohydrolase; COG0756 dUTPase. | 0.869 |
AGZ32812.1 | thyA | PVLB_00010 | PVLB_01360 | COG0592 DNA polymerase sliding clamp subunit (PCNA homolog). | COG0207 Thymidylate synthase. | 0.801 |
AGZ32952.1 | AGZ32812.1 | PVLB_00710 | PVLB_00010 | DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | COG0592 DNA polymerase sliding clamp subunit (PCNA homolog). | 0.995 |
AGZ32952.1 | AGZ33975.1 | PVLB_00710 | PVLB_05840 | DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | COG0209 Ribonucleotide reductase, alpha subunit. | 0.847 |
AGZ32952.1 | dcd | PVLB_00710 | PVLB_05500 | DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | COG0717 Deoxycytidine deaminase. | 0.453 |
AGZ32952.1 | dut | PVLB_00710 | PVLB_25040 | DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | Deoxyuridine 5'-triphosphate nucleotidohydrolase; COG0756 dUTPase. | 0.665 |
AGZ32952.1 | surE | PVLB_00710 | PVLB_19345 | DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | 5'(3')-nucleotidase/polyphosphatase; COG0496 Predicted acid phosphatase. | 0.412 |
AGZ32952.1 | thyA | PVLB_00710 | PVLB_01360 | DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | COG0207 Thymidylate synthase. | 0.721 |
AGZ33975.1 | AGZ32812.1 | PVLB_05840 | PVLB_00010 | COG0209 Ribonucleotide reductase, alpha subunit. | COG0592 DNA polymerase sliding clamp subunit (PCNA homolog). | 0.868 |
AGZ33975.1 | AGZ32952.1 | PVLB_05840 | PVLB_00710 | COG0209 Ribonucleotide reductase, alpha subunit. | DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | 0.847 |
AGZ33975.1 | dcd | PVLB_05840 | PVLB_05500 | COG0209 Ribonucleotide reductase, alpha subunit. | COG0717 Deoxycytidine deaminase. | 0.607 |
AGZ33975.1 | dut | PVLB_05840 | PVLB_25040 | COG0209 Ribonucleotide reductase, alpha subunit. | Deoxyuridine 5'-triphosphate nucleotidohydrolase; COG0756 dUTPase. | 0.866 |
AGZ33975.1 | ndk | PVLB_05840 | PVLB_20685 | COG0209 Ribonucleotide reductase, alpha subunit. | Multifunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-phosphodiesterase; COG0105 Nucleoside diphosphate kinase. | 0.943 |
AGZ33975.1 | thyA | PVLB_05840 | PVLB_01360 | COG0209 Ribonucleotide reductase, alpha subunit. | COG0207 Thymidylate synthase. | 0.889 |
AGZ35871.1 | AGZ37633.1 | PVLB_15435 | PVLB_24270 | 5'-nucleotidase. | COG1011 Predicted hydrolase (HAD superfamily). | 0.900 |
AGZ35871.1 | dut | PVLB_15435 | PVLB_25040 | 5'-nucleotidase. | Deoxyuridine 5'-triphosphate nucleotidohydrolase; COG0756 dUTPase. | 0.900 |
AGZ35871.1 | surE | PVLB_15435 | PVLB_19345 | 5'-nucleotidase. | 5'(3')-nucleotidase/polyphosphatase; COG0496 Predicted acid phosphatase. | 0.900 |
AGZ35871.1 | thyA | PVLB_15435 | PVLB_01360 | 5'-nucleotidase. | COG0207 Thymidylate synthase. | 0.900 |
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