STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ37814.1Chorismate lyase; COG3161 4-hydroxybenzoate synthetase (chorismate lyase). (185 aa)    
Predicted Functional Partners:
ubiA
COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases.
    
 0.986
AGZ36610.1
Tol-pal system-associated acyl-CoA thioesterase; COG0824 Predicted thioesterase.
    
 0.905
AGZ34110.1
Bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; COG0287 Prephenate dehydrogenase.
    
 0.887
AGZ34109.1
Bifunctional chorismate mutase/prephenate dehydratase PheA; COG1605 Chorismate mutase.
    
 0.881
AGZ33195.1
COG1605 Chorismate mutase.
 
  
 0.844
AGZ36838.1
COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase.
  
  
  0.835
AGZ37403.1
COG0147 Anthranilate/para-aminobenzoate synthases component I.
    
 0.823
AGZ37400.1
COG0512 Anthranilate/para-aminobenzoate synthases component II.
    
 0.813
AGZ34251.1
COG1448 Aspartate/tyrosine/aromatic aminotransferase.
     
 0.803
AGZ35078.1
COG1448 Aspartate/tyrosine/aromatic aminotransferase.
     
 0.803
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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