CBR_g83918 protein (Chara braunii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CBR_g83918

Uncharacterized protein. (321 aa)

Predicted Functional Partners:

CBR_g20362

0.622

CBR_g19026

0.600

CBR_g39666

0.565

CBR_g20374

0.556

CBR_g30932

0.521

CBR_g51004

0.521

CBR_g29892

0.518

CBR_g50131

0.518

CBR_g21828

0.512

CBR_g22973

0.512

Your Current Organism:

Chara braunii

NCBI taxonomy Id: 69332
Other names: C. braunii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBR_g19026	CBR_g21828	A0A388KX37	A0A388JUM5	Peptidylprolyl isomerase.	Uncharacterized protein.	0.654
CBR_g19026	CBR_g22973	A0A388KX37	A0A388L382	Peptidylprolyl isomerase.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.727
CBR_g19026	CBR_g39666	A0A388KX37	A0A388K1I3	Peptidylprolyl isomerase.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.877
CBR_g19026	CBR_g83918	A0A388KX37	A0A388JJN7	Peptidylprolyl isomerase.	Uncharacterized protein.	0.600
CBR_g20362	CBR_g20374	A0A388JU76	A0A388JU85	Uncharacterized protein.	Uncharacterized protein.	0.511
CBR_g20362	CBR_g21828	A0A388JU76	A0A388JUM5	Uncharacterized protein.	Uncharacterized protein.	0.905
CBR_g20362	CBR_g22973	A0A388JU76	A0A388L382	Uncharacterized protein.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.804
CBR_g20362	CBR_g29892	A0A388JU76	A0A388JWU4	Uncharacterized protein.	HECT domain-containing protein.	0.705
CBR_g20362	CBR_g39666	A0A388JU76	A0A388K1I3	Uncharacterized protein.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.739
CBR_g20362	CBR_g50131	A0A388JU76	A0A388M619	Uncharacterized protein.	HECT domain-containing protein.	0.705
CBR_g20362	CBR_g83918	A0A388JU76	A0A388JJN7	Uncharacterized protein.	Uncharacterized protein.	0.622
CBR_g20374	CBR_g20362	A0A388JU85	A0A388JU76	Uncharacterized protein.	Uncharacterized protein.	0.511
CBR_g20374	CBR_g30932	A0A388JU85	A0A388LDT5	Uncharacterized protein.	DNA primase; Belongs to the eukaryotic-type primase small subunit family.	0.631
CBR_g20374	CBR_g51004	A0A388JU85	A0A388M7Z7	Uncharacterized protein.	DNA primase; Belongs to the eukaryotic-type primase small subunit family.	0.631
CBR_g20374	CBR_g83918	A0A388JU85	A0A388JJN7	Uncharacterized protein.	Uncharacterized protein.	0.556
CBR_g21828	CBR_g19026	A0A388JUM5	A0A388KX37	Uncharacterized protein.	Peptidylprolyl isomerase.	0.654
CBR_g21828	CBR_g20362	A0A388JUM5	A0A388JU76	Uncharacterized protein.	Uncharacterized protein.	0.905
CBR_g21828	CBR_g22973	A0A388JUM5	A0A388L382	Uncharacterized protein.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.999
CBR_g21828	CBR_g39666	A0A388JUM5	A0A388K1I3	Uncharacterized protein.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.999
CBR_g21828	CBR_g83918	A0A388JUM5	A0A388JJN7	Uncharacterized protein.	Uncharacterized protein.	0.512