Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBR_g75925Uncharacterized protein. (157 aa)    
Predicted Functional Partners:
CBR_g49709
RT_RNaseH_2 domain-containing protein.
  
 
 0.948
CBR_g29439
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.920
CBR_g44935
Uncharacterized protein.
  
 
 
 0.915
CBR_g74660
Uncharacterized protein.
  
 
 
 0.913
CBR_g3782
Uncharacterized protein.
    
 
 0.821
CBR_g8475
SET domain-containing protein.
  
 
 
 0.690
CBR_g34275
Thioredoxin domain-containing protein.
    
 
 0.633
CBR_g41228
Uncharacterized protein.
    
 
 0.573
CBR_g38981
PDZ domain-containing protein.
    
 
 0.544
CBR_g855
HTH myb-type domain-containing protein.
    
 
 0.544
Your Current Organism:
Chara braunii
NCBI taxonomy Id: 69332
Other names: C. braunii
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