CBR_g8644 protein (Chara braunii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CBR_g8644

Uncharacterized protein. (277 aa)

Predicted Functional Partners:

CBR_g26294

0.704

CBR_g49013

0.649

CBR_g48690

0.581

CBR_g57848

0.569

CBR_g38837

0.541

CBR_g50925

0.494

CBR_g21144

0.431

CBR_g23547

0.431

CBR_g55371

0.431

Your Current Organism:

Chara braunii

NCBI taxonomy Id: 69332
Other names: C. braunii

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBR_g21144	CBR_g49013	A0A388L0Y9	A0A388M4B3	Uncharacterized protein.	KH domain-containing protein.	0.436
CBR_g21144	CBR_g8644	A0A388L0Y9	A0A388JS31	Uncharacterized protein.	Uncharacterized protein.	0.431
CBR_g23547	CBR_g49013	A0A388L4I6	A0A388M4B3	Uncharacterized protein.	KH domain-containing protein.	0.436
CBR_g23547	CBR_g8644	A0A388L4I6	A0A388JS31	Uncharacterized protein.	Uncharacterized protein.	0.431
CBR_g26294	CBR_g57848	A0A388L7T6	A0A388K8B5	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.630
CBR_g26294	CBR_g8644	A0A388L7T6	A0A388JS31	Uncharacterized protein.	Uncharacterized protein.	0.704
CBR_g38837	CBR_g49013	A0A388LQM9	A0A388M4B3	Uncharacterized protein.	KH domain-containing protein.	0.723
CBR_g38837	CBR_g8644	A0A388LQM9	A0A388JS31	Uncharacterized protein.	Uncharacterized protein.	0.541
CBR_g48690	CBR_g49013	A0A388K4F6	A0A388M4B3	Uncharacterized protein.	KH domain-containing protein.	0.626
CBR_g48690	CBR_g50925	A0A388K4F6	A0A388M7Z5	Uncharacterized protein.	Uncharacterized protein.	0.468
CBR_g48690	CBR_g8644	A0A388K4F6	A0A388JS31	Uncharacterized protein.	Uncharacterized protein.	0.581
CBR_g49013	CBR_g21144	A0A388M4B3	A0A388L0Y9	KH domain-containing protein.	Uncharacterized protein.	0.436
CBR_g49013	CBR_g23547	A0A388M4B3	A0A388L4I6	KH domain-containing protein.	Uncharacterized protein.	0.436
CBR_g49013	CBR_g38837	A0A388M4B3	A0A388LQM9	KH domain-containing protein.	Uncharacterized protein.	0.723
CBR_g49013	CBR_g48690	A0A388M4B3	A0A388K4F6	KH domain-containing protein.	Uncharacterized protein.	0.626
CBR_g49013	CBR_g50925	A0A388M4B3	A0A388M7Z5	KH domain-containing protein.	Uncharacterized protein.	0.533
CBR_g49013	CBR_g55371	A0A388M4B3	A0A388MCZ1	KH domain-containing protein.	Uncharacterized protein.	0.436
CBR_g49013	CBR_g8644	A0A388M4B3	A0A388JS31	KH domain-containing protein.	Uncharacterized protein.	0.649
CBR_g50925	CBR_g48690	A0A388M7Z5	A0A388K4F6	Uncharacterized protein.	Uncharacterized protein.	0.468
CBR_g50925	CBR_g49013	A0A388M7Z5	A0A388M4B3	Uncharacterized protein.	KH domain-containing protein.	0.533