Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cbduo1MYB transcription factor CbDUO1. (1503 aa)    
Predicted Functional Partners:
CBR_g29959
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.785
CBR_g38866
CRC domain-containing protein.
    
 0.760
CBR_g41354
Uncharacterized protein.
    
 0.760
CBR_g22377
Uncharacterized protein; Belongs to the cyclin family.
   
 0.725
CBR_g26051
Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.
   
 0.725
CBR_g32188
Uncharacterized protein.
      
 0.703
CBR_g26287
DIRP domain-containing protein.
    
 0.677
CBR_g26286
SANT domain-containing protein.
    
 0.677
CBR_g19301
HAP2-GCS1 domain-containing protein.
    
 
 0.669
CBR_g8489
WD_REPEATS_REGION domain-containing protein.
    
  0.644
Your Current Organism:
Chara braunii
NCBI taxonomy Id: 69332
Other names: C. braunii
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