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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBR_g8594Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. (245 aa)    
Predicted Functional Partners:
CBR_g21850
Uncharacterized protein.
  
 
 0.913
CBR_g3979
Uncharacterized protein.
  
 
 0.895
CBR_g49054
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.
  
 
 0.877
CBR_g21235
Uncharacterized protein.
  
   0.868
CBR_g52047
40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
  
   0.864
CBR_g48389
Uncharacterized protein.
  
 0.860
CBR_g51380
Uncharacterized protein.
  
   0.860
CBR_g37184
Uncharacterized protein.
   
   0.859
CBR_g55230
Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.
   
   0.851
CBR_g41367
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.849
Your Current Organism:
Chara braunii
NCBI taxonomy Id: 69332
Other names: C. braunii
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