Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBR_g12410NUC153 domain-containing protein. (706 aa)    
Predicted Functional Partners:
CBR_g5707
WD_REPEATS_REGION domain-containing protein.
   
 0.997
CBR_g45300
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 0.997
CBR_g12704
WD_REPEATS_REGION domain-containing protein.
   
 0.996
CBR_g37218
Brix domain-containing protein.
   
 0.996
CBR_g21842
WD_REPEATS_REGION domain-containing protein.
   
 0.995
CBR_g37736
Uncharacterized protein.
   
 0.995
CBR_g984
Uncharacterized protein.
   
 
 0.995
CBR_g4135
Uncharacterized protein.
   
 0.995
CBR_g31384
Uncharacterized protein.
   
 0.995
CBR_g19186
PI3K/PI4K domain-containing protein.
   
 0.994
Your Current Organism:
Chara braunii
NCBI taxonomy Id: 69332
Other names: C. braunii
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