STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBR_g12420PPDK_N domain-containing protein. (1339 aa)    
Predicted Functional Partners:
CBR_g4741
HECT domain-containing protein.
     
  0.874
CBR_g6392
Uncharacterized protein.
    
 0.697
CBR_g24146
Uncharacterized protein.
    
 0.562
CBR_g20339
Uncharacterized protein.
  
 
 0.545
CBR_g54194
Uncharacterized protein.
    
  0.506
CBR_g37675
Protein kinase domain-containing protein.
     
  0.482
CBR_g19872
Uncharacterized protein.
     
  0.482
CBR_g319
Uncharacterized protein.
     
  0.477
GCP1
Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in mitochondrial tRNAs that read codons beginning with adenine. Probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Involved in mitochondrial genome maintenance.
     
  0.474
CBR_g20188
Shikimate_dh_N domain-containing protein.
     
  0.474
Your Current Organism:
Chara braunii
NCBI taxonomy Id: 69332
Other names: C. braunii
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