CBR_g8647 protein (Chara braunii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CBR_g8647

WD_REPEATS_REGION domain-containing protein. (1799 aa)

Predicted Functional Partners:

CBR_g19774

0.986

CBR_g38931

0.967

CBR_g39890

0.967

CBR_g23054

0.920

CBR_g34346

0.905

CBR_g24311

0.875

CBR_g24313

0.875

CBR_g15955

0.831

CBR_g30593

0.831

CBR_g40798

0.831

Your Current Organism:

Chara braunii

NCBI taxonomy Id: 69332
Other names: C. braunii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBR_g15955	CBR_g19774	A0A388JSZ5	A0A388JU55	C3H1-type domain-containing protein.	Uncharacterized protein.	0.936
CBR_g15955	CBR_g24311	A0A388JSZ5	A0A388JMH0	C3H1-type domain-containing protein.	Reverse transcriptase domain-containing protein.	0.884
CBR_g15955	CBR_g24313	A0A388JSZ5	A0A388JMJ1	C3H1-type domain-containing protein.	YjeF N-terminal domain-containing protein.	0.884
CBR_g15955	CBR_g34346	A0A388JSZ5	A0A388LIB9	C3H1-type domain-containing protein.	Uncharacterized protein.	0.822
CBR_g15955	CBR_g8647	A0A388JSZ5	A0A388JS93	C3H1-type domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.831
CBR_g19774	CBR_g15955	A0A388JU55	A0A388JSZ5	Uncharacterized protein.	C3H1-type domain-containing protein.	0.936
CBR_g19774	CBR_g23054	A0A388JU55	A0A388L3L5	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.986
CBR_g19774	CBR_g24311	A0A388JU55	A0A388JMH0	Uncharacterized protein.	Reverse transcriptase domain-containing protein.	0.979
CBR_g19774	CBR_g24313	A0A388JU55	A0A388JMJ1	Uncharacterized protein.	YjeF N-terminal domain-containing protein.	0.979
CBR_g19774	CBR_g30593	A0A388JU55	A0A388LD75	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.936
CBR_g19774	CBR_g34346	A0A388JU55	A0A388LIB9	Uncharacterized protein.	Uncharacterized protein.	0.986
CBR_g19774	CBR_g38931	A0A388JU55	A0A388K0M7	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.980
CBR_g19774	CBR_g39890	A0A388JU55	A0A388LSW2	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.980
CBR_g19774	CBR_g40798	A0A388JU55	A0A388LUI8	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.936
CBR_g19774	CBR_g8647	A0A388JU55	A0A388JS93	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.986
CBR_g23054	CBR_g19774	A0A388L3L5	A0A388JU55	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.986
CBR_g23054	CBR_g24311	A0A388L3L5	A0A388JMH0	Uncharacterized protein; Belongs to the DEAD box helicase family.	Reverse transcriptase domain-containing protein.	0.980
CBR_g23054	CBR_g24313	A0A388L3L5	A0A388JMJ1	Uncharacterized protein; Belongs to the DEAD box helicase family.	YjeF N-terminal domain-containing protein.	0.980
CBR_g23054	CBR_g34346	A0A388L3L5	A0A388LIB9	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.644
CBR_g23054	CBR_g38931	A0A388L3L5	A0A388K0M7	Uncharacterized protein; Belongs to the DEAD box helicase family.	Nudix hydrolase domain-containing protein.	0.967