CBR_g16035 protein (Chara braunii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CBR_g16035

Uncharacterized protein. (1716 aa)

Predicted Functional Partners:

CBR_g26451

0.983

CBR_g11181

0.976

CBR_g42040

0.976

CBR_g32336

0.967

CBR_g6392

0.960

CBR_g61481

0.943

CBR_g36665

0.943

CBR_g36663

0.943

CBR_g47955

0.940

CBR_g23159

0.936

Your Current Organism:

Chara braunii

NCBI taxonomy Id: 69332
Other names: C. braunii

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBR_g11181	CBR_g16035	A0A388KQA2	A0A388JSX5	Uncharacterized protein.	Uncharacterized protein.	0.976
CBR_g11181	CBR_g23159	A0A388KQA2	A0A388L3Q8	Uncharacterized protein.	HSA domain-containing protein.	0.760
CBR_g11181	CBR_g26451	A0A388KQA2	A0A388L861	Uncharacterized protein.	Uncharacterized protein.	0.599
CBR_g11181	CBR_g32336	A0A388KQA2	A0A388JNF6	Uncharacterized protein.	Uncharacterized protein.	0.556
CBR_g11181	CBR_g36663	A0A388KQA2	A0A388LLE7	Uncharacterized protein.	Uncharacterized protein.	0.761
CBR_g11181	CBR_g36665	A0A388KQA2	A0A388LL47	Uncharacterized protein.	Uncharacterized protein.	0.761
CBR_g11181	CBR_g47955	A0A388KQA2	A0A388M1V2	Uncharacterized protein.	Uncharacterized protein.	0.765
CBR_g11181	CBR_g61481	A0A388KQA2	A0A388K8Q9	Uncharacterized protein.	Uncharacterized protein.	0.761
CBR_g11181	CBR_g6392	A0A388KQA2	A0A388KJX1	Uncharacterized protein.	Uncharacterized protein.	0.976
CBR_g16035	CBR_g11181	A0A388JSX5	A0A388KQA2	Uncharacterized protein.	Uncharacterized protein.	0.976
CBR_g16035	CBR_g23159	A0A388JSX5	A0A388L3Q8	Uncharacterized protein.	HSA domain-containing protein.	0.936
CBR_g16035	CBR_g26451	A0A388JSX5	A0A388L861	Uncharacterized protein.	Uncharacterized protein.	0.983
CBR_g16035	CBR_g32336	A0A388JSX5	A0A388JNF6	Uncharacterized protein.	Uncharacterized protein.	0.967
CBR_g16035	CBR_g36663	A0A388JSX5	A0A388LLE7	Uncharacterized protein.	Uncharacterized protein.	0.943
CBR_g16035	CBR_g36665	A0A388JSX5	A0A388LL47	Uncharacterized protein.	Uncharacterized protein.	0.943
CBR_g16035	CBR_g42040	A0A388JSX5	A0A388LWS2	Uncharacterized protein.	Uncharacterized protein.	0.976
CBR_g16035	CBR_g47955	A0A388JSX5	A0A388M1V2	Uncharacterized protein.	Uncharacterized protein.	0.940
CBR_g16035	CBR_g61481	A0A388JSX5	A0A388K8Q9	Uncharacterized protein.	Uncharacterized protein.	0.943
CBR_g16035	CBR_g6392	A0A388JSX5	A0A388KJX1	Uncharacterized protein.	Uncharacterized protein.	0.960
CBR_g23159	CBR_g11181	A0A388L3Q8	A0A388KQA2	HSA domain-containing protein.	Uncharacterized protein.	0.760