Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBR_g16050Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (424 aa)    
Predicted Functional Partners:
CBR_g66667
ATG13 domain-containing protein.
   
 0.862
CBR_g41810
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
    
 0.779
CBR_g4474
AMP-binding domain-containing protein.
     
 0.724
CBR_g24398
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
     
 0.719
CBR_g36926
TPR_REGION domain-containing protein.
    
  0.697
CBR_g3545
TPR_REGION domain-containing protein.
    
  0.697
CBR_g4187
Uncharacterized protein.
    
  0.667
CBR_g30958
Uncharacterized protein.
    
 0.647
CBR_g30957
Ald_Xan_dh_C2 domain-containing protein.
    
 0.647
CBR_g55234
Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
     
 0.647
Your Current Organism:
Chara braunii
NCBI taxonomy Id: 69332
Other names: C. braunii
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