CBR_g18560 protein (Chara braunii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CBR_g18560

Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (303 aa)

Predicted Functional Partners:

CBR_g2791

0.976

CBR_g44348

0.969

CBR_g26051

0.936

CBR_g45825

0.913

CBR_g38006

0.897

CBR_g46429

0.897

CBR_g33929

0.896

CBR_g41292

0.896

CBR_g41293

0.896

CBR_g29551

0.894

Your Current Organism:

Chara braunii

NCBI taxonomy Id: 69332
Other names: C. braunii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBR_g18560	CBR_g26051	A0A388JT42	A0A388L756	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.936
CBR_g18560	CBR_g2791	A0A388JT42	A0A388KDV6	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.976
CBR_g18560	CBR_g29551	A0A388JT42	A0A388LB46	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.894
CBR_g18560	CBR_g33929	A0A388JT42	A0A388LHL4	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	WD_REPEATS_REGION domain-containing protein.	0.896
CBR_g18560	CBR_g38006	A0A388JT42	A0A388LPD0	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	WD_REPEATS_REGION domain-containing protein.	0.897
CBR_g18560	CBR_g41292	A0A388JT42	A0A388LVF7	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	WD_REPEATS_REGION domain-containing protein.	0.896
CBR_g18560	CBR_g41293	A0A388JT42	A0A388LVM4	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	WD_REPEATS_REGION domain-containing protein.	0.896
CBR_g18560	CBR_g44348	A0A388JT42	A0A388K3E3	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.969
CBR_g18560	CBR_g45825	A0A388JT42	A0A388LZH8	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.913
CBR_g18560	CBR_g46429	A0A388JT42	A0A388M0G0	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.897
CBR_g26051	CBR_g18560	A0A388L756	A0A388JT42	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.936
CBR_g26051	CBR_g2791	A0A388L756	A0A388KDV6	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.974
CBR_g26051	CBR_g29551	A0A388L756	A0A388LB46	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.754
CBR_g26051	CBR_g33929	A0A388L756	A0A388LHL4	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	WD_REPEATS_REGION domain-containing protein.	0.887
CBR_g26051	CBR_g38006	A0A388L756	A0A388LPD0	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	WD_REPEATS_REGION domain-containing protein.	0.887
CBR_g26051	CBR_g41292	A0A388L756	A0A388LVF7	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	WD_REPEATS_REGION domain-containing protein.	0.887
CBR_g26051	CBR_g41293	A0A388L756	A0A388LVM4	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	WD_REPEATS_REGION domain-containing protein.	0.887
CBR_g26051	CBR_g44348	A0A388L756	A0A388K3E3	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Protein kinase domain-containing protein.	0.902
CBR_g26051	CBR_g45825	A0A388L756	A0A388LZH8	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.917
CBR_g2791	CBR_g18560	A0A388KDV6	A0A388JT42	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.976