CBR_g30300 protein (Chara braunii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CBR_g30300

SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family. (399 aa)

Predicted Functional Partners:

CBR_g8305

0.611

CBR_g19110

0.611

CBR_g28800

0.611

CBR_g50810

0.611

CBR_g57961

0.611

CBR_g51930

0.606

CBR_g3171

0.486

CBR_g37635

0.486

CBR_g51920

0.486

CBR_g8635

0.470

Your Current Organism:

Chara braunii

NCBI taxonomy Id: 69332
Other names: C. braunii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBR_g19110	CBR_g30300	A0A388KXD5	A0A388JX29	Uncharacterized protein; Belongs to the ClpA/ClpB family.	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.	0.611
CBR_g19110	CBR_g3171	A0A388KXD5	A0A388KF05	Uncharacterized protein; Belongs to the ClpA/ClpB family.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.715
CBR_g19110	CBR_g37635	A0A388KXD5	A0A388LNA7	Uncharacterized protein; Belongs to the ClpA/ClpB family.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.715
CBR_g19110	CBR_g51920	A0A388KXD5	A0A388M949	Uncharacterized protein; Belongs to the ClpA/ClpB family.	Uncharacterized protein.	0.715
CBR_g19110	CBR_g8635	A0A388KXD5	A0A388JS21	Uncharacterized protein; Belongs to the ClpA/ClpB family.	HATPase_c domain-containing protein.	0.701
CBR_g28800	CBR_g30300	A0A388L9U2	A0A388JX29	Uncharacterized protein; Belongs to the ClpA/ClpB family.	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.	0.611
CBR_g28800	CBR_g3171	A0A388L9U2	A0A388KF05	Uncharacterized protein; Belongs to the ClpA/ClpB family.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.715
CBR_g28800	CBR_g37635	A0A388L9U2	A0A388LNA7	Uncharacterized protein; Belongs to the ClpA/ClpB family.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.715
CBR_g28800	CBR_g51920	A0A388L9U2	A0A388M949	Uncharacterized protein; Belongs to the ClpA/ClpB family.	Uncharacterized protein.	0.715
CBR_g28800	CBR_g8635	A0A388L9U2	A0A388JS21	Uncharacterized protein; Belongs to the ClpA/ClpB family.	HATPase_c domain-containing protein.	0.672
CBR_g30300	CBR_g19110	A0A388JX29	A0A388KXD5	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.	Uncharacterized protein; Belongs to the ClpA/ClpB family.	0.611
CBR_g30300	CBR_g28800	A0A388JX29	A0A388L9U2	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.	Uncharacterized protein; Belongs to the ClpA/ClpB family.	0.611
CBR_g30300	CBR_g3171	A0A388JX29	A0A388KF05	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.486
CBR_g30300	CBR_g37635	A0A388JX29	A0A388LNA7	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.486
CBR_g30300	CBR_g50810	A0A388JX29	A0A388M799	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.	Clp_N domain-containing protein.	0.611
CBR_g30300	CBR_g51920	A0A388JX29	A0A388M949	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.	Uncharacterized protein.	0.486
CBR_g30300	CBR_g51930	A0A388JX29	A0A388M979	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.	Uncharacterized protein.	0.606
CBR_g30300	CBR_g57961	A0A388JX29	A0A388MEM6	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.	Uncharacterized protein; Belongs to the ClpA/ClpB family.	0.611
CBR_g30300	CBR_g8305	A0A388JX29	A0A388KLU4	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.	UVR domain-containing protein; Belongs to the ClpA/ClpB family.	0.611
CBR_g30300	CBR_g8635	A0A388JX29	A0A388JS21	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.	HATPase_c domain-containing protein.	0.470